miRBase entry: tgu-mir-2979-1

Stem-loop tgu-mir-2979-1


Accession
MI0013677
Description
Taeniopygia guttata tgu-mir-2979-1 precursor miRNA
Gene family
MIPF0001024; mir-2979


Sequence

caggauuagcuggUCCAGAACCUUUCAAGGGACUGAagugagacugaccagcCUCAGUUCCUUGGGUUCUGCUGCUugcuuuuccug
(((((..(((.(((.(((((((...(((((((((((.((..(.....)..)).))))))))))))))))))..))).)))..)))))

Structure
     uu   u   -C       UUU           a  ga a 
cagga  agc ggU  CAGAACC   CAAGGGACUGA gu  g c
|||||  ||| |||  |||||||   ||||||||||| ||  | u
guccu  ucg UCG  GUCUUGG   GUUCCUUGACU cg  c g
     uu   u   UC       ---           C  ac a 


Annotation confidence Not enough data
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Genome context
chr1: 47711423-47711509 [-]

Database links

Mature tgu-miR-2979-5p

Accession MIMAT0014489
Description Taeniopygia guttata tgu-miR-2979-5p mature miRNA
Sequence 14 - UCCAGAACCUUUCAAGGGACUGA - 36
Evidence experimental
454 [1], Illumina [1-2]

Mature tgu-miR-2979-3p

Accession MIMAT0026969
Description Taeniopygia guttata tgu-miR-2979-3p mature miRNA
Sequence 53 - CUCAGUUCCUUGGGUUCUGCUGCU - 76
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727