Stem-loop sequence tgu-mir-425

AccessionMI0013657 (change log)
DescriptionTaeniopygia guttata miR-425 stem-loop
Gene family MIPF0000242; mir-425
Literature search

1 open access papers mention tgu-mir-425
(1 sentences)

Stem-loop 
         ug         u       u  cu    c  a  cag a 
5' gagaga  gcuuuggaa gacacga ca  cccg ug gc   c g
   ||||||  ||||||||| ||||||| ||  |||| || ||   | c
3' cuuucu  cgaaaccuu cugugcu gu  gggc ac cg   g c
         --         u       -  ag    u  -  aga a
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (taeGlu3.2.4) Overlapping transcripts
chr12: 12254268-12254356 [+]
sense
ENSTGUT00000018433 ; tgu-mir-425-201; exon 1
Clustered miRNAs
< 10kb from tgu-mir-425
tgu-mir-425chr12: 12254268-12254356 [+]
tgu-mir-2970chr12: 12254481-12254632 [+]
Database links

Mature sequence tgu-miR-425-5p

Accession MIMAT0014470
Sequence

16 -  

aaugacacgaucacucccgcug

 - 37

Get sequence
Evidence experimental; 454 [1], Illumina [1-2]

Mature sequence tgu-miR-425-3p

Accession MIMAT0014471
Sequence

56 -  

caucggggaugucgugucuuu

 - 76

Get sequence
Evidence experimental; 454 [1], Illumina [1-2]

References

1
PMID:20360741 "The genome of a songbird" Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li Nature. 464:757-762(2010).
2
PMID:23268654 "Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression" Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X BMC Genomics. 13:727(2012).