miRBase entry: tgu-mir-219b

Stem-loop tgu-mir-219b


Accession
MI0013651
Description
Taeniopygia guttata tgu-mir-219b precursor miRNA
Gene family
MIPF0000044; mir-219

Literature search
1 open access papers mention tgu-mir-219b
(1 sentences)

Sequence

ccccgagaaccguccuggagccccgccggaggaggugaaaccucugcuacagauguccagacacaauucuugguucguacggcuccaucgCACAAGAAUUGCGUUUGGACAaucaggagcggagauucccaucccgggcucgcgggaucuuccagggg
((((..(((..((((((((((((....((.((.((.(((..(((((((...(((((((((((.(((((((((...((...........))..))))))))).)))))))).)))...))))))).))))).)))))))))).)))))).)))..))))

Structure
    ga   cc      -      cgcc  a  a  u   ac       aca   -        a         guu  uacg 
cccc  gaa  guccug gagccc    gg gg gg gaa  cucugcu   gau guccagac caauucuug   cg    g
||||  |||  |||||| ||||||    || || || |||  |||||||   ||| |||||||| |||||||||   ||    c
gggg  cuu  uagggc cucggg    cc cu cc cuu  gaggcga   cua CAGGUUUG GUUAAGAAC   gc    u
    ac   -c      g      ----  -  a  -   -a       gga   A        C         -AC  uacc 


Annotation confidence Not enough data
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Genome context
chr17: 5454921-5455078 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from tgu-mir-219b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tgu-miR-219b

Accession MIMAT0014464
Description Taeniopygia guttata tgu-miR-219b mature miRNA
Sequence 91 - CACAAGAAUUGCGUUUGGACA - 111
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727