Stem-loop sequence tgu-mir-219b

AccessionMI0013651 (change log)
DescriptionTaeniopygia guttata miR-219b stem-loop
Gene family MIPF0000044; mir-219
Literature search

1 open access papers mention tgu-mir-219b
(1 sentences)

Stem-loop 
       ga   cc      -      cgcc   gga  u   ac       aca   -        a         guu  uac g 
5' cccc  gaa  guccug gagccc    gga   gg gaa  cucugcu   gau guccagac caauucuug   cg   g c
   ||||  |||  |||||| ||||||    |||   || |||  |||||||   ||| |||||||| |||||||||   ||   |  
3' gggg  cuu  uagggc cucggg    ccu   cc cuu  gaggcga   cua cagguuug guuaagaac   gc   c u
       ac   -c      g      ---c   --a  -   -a       gga   a        c         -ac  -ua c
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (taeGlu3.2.4) Overlapping transcripts
chr17: 5454921-5455078 [-]
antisense
ENSTGUT00000003692 ; ST6GALNAC4-201; intron 3
Clustered miRNAs
< 10kb from tgu-mir-219b
tgu-mir-219achr17: 5454954-5455025 [+]
tgu-mir-219bchr17: 5454921-5455078 [-]
Database links

Mature sequence tgu-miR-219b

Accession MIMAT0014464
Sequence

91 -  

cacaagaauugcguuuggaca

 - 111

Get sequence
Evidence experimental; Illumina [1-2]

References

1
PMID:20360741 "The genome of a songbird" Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li Nature. 464:757-762(2010).
2
PMID:23268654 "Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression" Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X BMC Genomics. 13:727(2012).