miRBase entry: tgu-mir-2958

Stem-loop tgu-mir-2958


Accession
MI0013643
Description
Taeniopygia guttata tgu-mir-2958 precursor miRNA


Sequence

gggagccuggcuggagccugaUGCUGGUGUAGAUGUGUCACAGUgcauccccaguggccacucuggcaccaacaccaguuuuggccccagucccugcuccc
((((((..((((((.(((....((((((((....((((((.((((...((.....)).)))).))))))..))))))))...))).)))).))..))))))

Structure
      cu  -    a   ugaU        AGAU      C    cau  c 
gggagc  gg cugg gcc    GCUGGUGU    GUGUCA AGUg   cc c
||||||  || |||| |||    ||||||||    |||||| ||||   || a
cccucg  cc gacc cgg    ugaccaca    cacggu ucac   gg g
      uc  u    c   -uuu        --ac      c    --c  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr21: 2262481-2262581 [-]

Database links

Mature tgu-miR-2958

Accession MIMAT0014456
Description Taeniopygia guttata tgu-miR-2958 mature miRNA
Sequence 22 - UGCUGGUGUAGAUGUGUCACAGU - 44
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727