miRBase entry: tgu-mir-2956-1

Stem-loop tgu-mir-2956-1


Accession
MI0013640
Description
Taeniopygia guttata tgu-mir-2956-1 precursor miRNA
Gene family
MIPF0000933; mir-2956

Literature search
1 open access papers mention tgu-mir-2956-1
(1 sentences)

Sequence

aagugggaauaaaUAGGAAACCAGGCUUUAUUAGUucugauuauaaacuaauaaagccugguuuccuacuuauuccuacuu
((((((((((((.(((((((((((((((((((((((.........))))))))))))))))))))))).))))))))))))

Structure
            a                       cug 
aagugggaauaa UAGGAAACCAGGCUUUAUUAGUu   a
|||||||||||| |||||||||||||||||||||||   u
uucauccuuauu auccuuugguccgaaauaaucaa   u
            c                       aua 


Annotation confidence Not enough data
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Genome context
chr4A: 17209002-17209082 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from tgu-mir-2956-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tgu-miR-2956

Accession MIMAT0014454
Description Taeniopygia guttata tgu-miR-2956 mature miRNA
Sequence 14 - UAGGAAACCAGGCUUUAUUAGU - 35
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727