miRBase entry: tgu-mir-1677

Stem-loop tgu-mir-1677


Accession
MI0013638
Description
Taeniopygia guttata tgu-mir-1677 precursor miRNA
Gene family
MIPF0000849; mir-1677


Sequence

uagggucugaUCCUGCACCGCUGAAGUCAauggaagcuuugucaUUGACUUCAAUAGGAGCAGGAUUugaaccuua
(((((((.((((((((.((..((((((((((((........))))))))))))...)).)))))))).).))))))

Structure
      - u        A  -GC            aag 
uagggu c gaUCCUGC CC   UGAAGUCAaugg   c
|||||| | |||||||| ||   ||||||||||||    
auucca g UUAGGACG GG   ACUUCAGUUacu   u
      a u        A  AUA            guu 


Annotation confidence Not enough data
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Genome context
chr3: 76231058-76231133 [+]

Database links

Mature tgu-miR-1677-5p

Accession MIMAT0014452
Description Taeniopygia guttata tgu-miR-1677-5p mature miRNA
Sequence 11 - UCCUGCACCGCUGAAGUCA - 29
Evidence experimental
Illumina [1-2]

Mature tgu-miR-1677-3p

Accession MIMAT0026959
Description Taeniopygia guttata tgu-miR-1677-3p mature miRNA
Sequence 45 - UUGACUUCAAUAGGAGCAGGAUU - 67
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727