miRBase entry: tgu-mir-1451

Stem-loop tgu-mir-1451


Accession
MI0013637
Description
Taeniopygia guttata tgu-mir-1451 precursor miRNA
Gene family
MIPF0001049; mir-1451


Sequence

gagcaagcgcaggagcugcugccUCGCACAGGAGCAAAUUACCGCGuucagcuaauccgCAGUAACUUGCUCCUGUGAGAgguagcggcuccuggcuccuc
(((..(((.((((((((((((((((.(((((((((((.((((.(((...........))).)))).))))))))))).))))))))))))))))))).)))

Structure
   ca   g                G           A    C   uuca 
gag  agc caggagcugcugccUC CACAGGAGCAA UUAC GCG    g
|||  ||| |||||||||||||||| ||||||||||| |||| |||    c
cuc  ucg guccucggcgauggAG GUGUCCUCGUU AAUG Cgc    u
   -c   -                A           C    A   cuaa 


Annotation confidence Not enough data
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Genome context
chr3: 78313627-78313727 [+]

Database links

Mature tgu-miR-1451-5p

Accession MIMAT0014451
Description Taeniopygia guttata tgu-miR-1451-5p mature miRNA
Sequence 24 - UCGCACAGGAGCAAAUUACCGCG - 46
Evidence experimental
Illumina [1-2]

Mature tgu-miR-1451-3p

Accession MIMAT0026958
Description Taeniopygia guttata tgu-miR-1451-3p mature miRNA
Sequence 60 - CAGUAACUUGCUCCUGUGAGA - 80
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20360741
    The genome of a songbird
    "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
    "Nature (2010) 464:757-762

  2. PubMed ID: 23268654
    Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
    Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
    BMC Genomics (2012) 13:727