Stem-loop sequence gga-mir-2954

Accession

MI0013634 (change log)

Description

Gallus gallus miR-2954 stem-loop

Gene family

MIPF0001032; mir-2954

Literature search

6 open access papers mention gga-mir-2954
(38 sentences)

Stem-loop

   cug        -ug     a   u  ua -   a 
5'    agagggcu   gggag gga ug  g ugg g
      ||||||||   ||||| ||| ||  | |||  
3'    ucucucga   uccuc ccu ac  c acc c
   cgg        cga     a   u  cc u   u 

Deep sequencing

249979 reads, 2.78e+03 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chrZ: 70733043-70733110 [+]
• Overlapping transcripts:

  sense

  ENSGALT00000043939 ; gga-mir-2954-201; exon 1

  ENSGALT00000044607 ; XPA-201; intron 3

Clustered miRNAs

< 10kb from gga-mir-2954

• gga-mir-2954: chrZ: 70733043-70733110 [+]
• gga-mir-1583: chrZ: 70734341-70734438 [+]

Database links

• EntrezGene:MIR2954
• RNAcentral:URS000075AB37_9031
• miRBase Tracker:MI0013634

Mature sequence gga-miR-2954

• Accession: MIMAT0014448
• Sequence: 37 - cauccccauuccacuccuagca - 58
• Deep sequencing: 249606 reads, 5 experiments
• Evidence: experimental; Northern [1]
• Database links:
  • RNAcentral:URS000014409F_9031
• Predicted targets:
  • TargetScanVert:gga-miR-2954
  • miRDB:gga-miR-2954

References

1. PMID:20220842 "Somatic sex identity is cell autonomous in the chicken" Zhao D, McBride D, Nandi S, McQueen HA, McGrew MJ, Hocking PM, Lewis PD, Sang HM, Clinton M Nature. 464:237-242(2010).