miRBase entry: cqu-mir-306

Stem-loop cqu-mir-306


Accession
MI0013626
Description
Culex quinquefasciatus cqu-mir-306 precursor miRNA


Sequence

uuggcUCAGGUACUGAGUGACUCUCAGcgugauaccauuuccaguuccugugagcaccucgguaccuuggcc
..((((.((((((((((((.(((.(((..((..........))....))).))))).)))))))))).))))

Structure
uu    C          -  A   U   --cg  auac 
  ggcU AGGUACUGAG UG CUC CAG    ug    c
  |||| |||||||||| || ||| |||    ||     
  ccgg uccauggcuc ac gag guc    ac    a
--    u          c  -   u   cuug  cuuu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
supercont3.83: 80431-80502 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cqu-mir-306
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cqu-miR-306

Accession MIMAT0014438
Description Culex quinquefasciatus cqu-miR-306 mature miRNA
Sequence 6 - UCAGGUACUGAGUGACUCUCAG - 27
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119