miRBase entry: cqu-mir-2952

Stem-loop cqu-mir-2952


Accession
MI0013624
Description
Culex quinquefasciatus cqu-mir-2952 precursor miRNA

Literature search
1 open access papers mention cqu-mir-2952
(5 sentences)

Sequence

gauccacagucacggcugguacugcauuggcuacgaucugUAGUACGGCCAUGACUGAGGGCuc
..(((.((((((.(((((.((((((((((....)))..)))))))))))).)))))).)))...

Structure
-ga   a      c     g       --   g 
   ucc caguca ggcug uacugca  uug c
   ||| |||||| ||||| |||||||  |||  
   GGG GUCAGU CCGGC AUGAUgu  agc u
cuC   A      A     -       cu   a 


Annotation confidence Not enough data
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Genome context
supercont3.5: 753920-753983 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from cqu-mir-2952
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cqu-miR-2952

Accession MIMAT0014436
Description Culex quinquefasciatus cqu-miR-2952 mature miRNA
Sequence 41 - UAGUACGGCCAUGACUGAGGGC - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119