miRBase entry: cqu-mir-2941-2

Stem-loop cqu-mir-2941-2


Accession
MI0013623
Description
Culex quinquefasciatus cqu-mir-2941-2 precursor miRNA
Gene family
MIPF0000842; mir-2941

Literature search
1 open access papers mention cqu-mir-2941-2
(11 sentences)

Sequence

guUGAAUUUCGCUGGAGUUCUGCCGGAuugcauugacgauuggaaauuugUAGUACGGCUAGAACUCCACGGacauucgac
(((((((((((.(((((((((((((.((((((................)))))).)))).))))))))))))).)))))))

Structure
       -    C         -    G      uugacga 
guUGAAU UUCG UGGAGUUCU GCCG Auugca       u
||||||| |||| ||||||||| |||| ||||||        
cagcuua aGGC ACCUCAAGA CGGC UGAUgu       u
       c    -         U    A      uuaaagg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
supercont3.5: 753788-753868 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from cqu-mir-2941-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cqu-miR-2941-3p

Accession MIMAT0014435
Description Culex quinquefasciatus cqu-miR-2941-3p mature miRNA
Sequence 51 - UAGUACGGCUAGAACUCCACGG - 72
Evidence experimental
Illumina [1]

Mature cqu-miR-2941-2-5p

Accession MIMAT0016971
Description Culex quinquefasciatus cqu-miR-2941-2-5p mature miRNA
Sequence 3 - UGAAUUUCGCUGGAGUUCUGCCGGA - 27
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119