miRBase entry: cqu-mir-11

Stem-loop cqu-mir-11


Accession
MI0013601
Description
Culex quinquefasciatus cqu-mir-11 precursor miRNA
Gene family
MIPF0000252; mir-11

Literature search
2 open access papers mention cqu-mir-11
(4 sentences)

Sequence

gugccgcgCGAGAACUCCGGCUGUGACCugugugccccguguugaacuucaCAUCACAGUCUGAGUUCUUGCUugg
...(((.((((((((((.((((((((..((((.................)))))))))))).)))))))))).)))

Structure
gug   c          C        CC    ugccccg 
   ccg gCGAGAACUC GGCUGUGA  ugug       u
   ||| |||||||||| ||||||||  ||||       g
   ggu CGUUCUUGAG CUGACACU  ACac       u
---   U          U        --    uucaagu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
supercont3.153: 639666-639741 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cqu-mir-11
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cqu-miR-11-5p

Accession MIMAT0014406
Description Culex quinquefasciatus cqu-miR-11-5p mature miRNA
Sequence 9 - CGAGAACUCCGGCUGUGACC - 28
Evidence experimental
Illumina [1]

Mature cqu-miR-11-3p

Accession MIMAT0014407
Description Culex quinquefasciatus cqu-miR-11-3p mature miRNA
Sequence 52 - CAUCACAGUCUGAGUUCUUGCU - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119