miRBase entry: cqu-mir-71

Stem-loop cqu-mir-71


Accession
MI0013596
Description
Culex quinquefasciatus cqu-mir-71 precursor miRNA
Gene family
MIPF0000278; mir-71


Sequence

cggcaAGAAAGACAUGGGUAGUGAGAUaguuuuacccugcauucgaaaaccgggaUCUCACUACCUUGUCUUUCAUGcugau
(((((.((((((((.((((((((((((.......(((..............))))))))))))))))))))))).)))))..

Structure
--     A        U            aguuuua   ugcauu 
  cggca GAAAGACA GGGUAGUGAGAU       ccc      c
  ||||| |||||||| ||||||||||||       |||       
  gucGU CUUUCUGU UCCAUCACUCUa       ggg      g
ua     A        -            -------   ccaaaa 


Annotation confidence Not enough data
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Genome context
supercont3.366: 117497-117578 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from cqu-mir-71
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cqu-miR-71-5p

Accession MIMAT0014400
Description Culex quinquefasciatus cqu-miR-71-5p mature miRNA
Sequence 6 - AGAAAGACAUGGGUAGUGAGAU - 27
Evidence experimental
Illumina [1]

Mature cqu-miR-71-3p

Accession MIMAT0014401
Description Culex quinquefasciatus cqu-miR-71-3p mature miRNA
Sequence 56 - UCUCACUACCUUGUCUUUCAUG - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119