miRBase entry: ghr-MIR398

Stem-loop ghr-MIR398


Accession
MI0013544
Description
Gossypium hirsutum ghr-MIR398 precursor miRNA
Gene family
MIPF0000107; MIR398

Literature search
9 open access papers mention ghr-MIR398
(44 sentences)

Sequence

gccaagaugguuuaccccagaggggugccaccuaagaacacaggucaucccuuaaccaaauagcuUGUGUUCUCAGGUCACCCCUUugggguacauauaucuucgc
((.((((((...(((((((((((((((..((((.(((((((((((.................))))))))))).)))))))))))))))))))....)))))).))

Structure
  c      -guu               cc    a           caucccu 
gc aagaug    uaccccagaggggug  accu agaacacaggu       u
|| ||||||    |||||||||||||||  |||| |||||||||||       a
cg uucuau    augggguUUCCCCAC  UGGA UCUUGUGUucg       a
  c      auac               --    C           auaaacc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ghr-miR398

Accession MIMAT0014337
Description Gossypium hirsutum ghr-miR398 mature miRNA
Sequence 66 - UGUGUUCUCAGGUCACCCCUU - 86
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19889219
    Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)
    Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ
    Genome Biol (2009) 10:R122