miRBase entry: bmo-mir-1000

Stem-loop bmo-mir-1000


Accession
MI0013533
Description
Bombyx mori bmo-mir-1000 precursor miRNA
Gene family
MIPF0000701; mir-1000

Literature search
1 open access papers mention bmo-mir-1000
(1 sentences)

Sequence

3 reads, 0 reads per million, 2 experiments
ggcgcgucgcggccAUAUUGUCCUGUCACAGCAGUacuuggaagcuacugcugcgucuggacaagccggccgcggcgccgcc
((((((((((((((...((((((.(.(.((((((((((....)).)))))))).).).))))))...)))))))))).))))

Structure
    -          AUA      U U A        -  u 
ggcg cgucgcggcc   UUGUCC G C CAGCAGUa cu g
|||| ||||||||||   |||||| | | |||||||| ||  
ccgc gcggcgccgg   aacagg c g gucgucau ga g
    c          ccg      u u c        c  a 


Annotation confidence Not enough data
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Genome context
NW_004581752.1: 862500-862581 [+]

Database links

Mature bmo-miR-1000

Accession MIMAT0014326
Description Bombyx mori bmo-miR-1000 mature miRNA
Sequence 15 - AUAUUGUCCUGUCACAGCAGU - 35
Evidence experimental
RTPCR [1], SOLID [2]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415

  2. PubMed ID: 19823945
    Computational identification and characteristics of novel microRNAs from the silkworm (Bombyx mori L.)
    "Huang Y, Zou Q, Tang SM, Wang LG, Shen XJ"
    "Mol Biol Rep (2010) 37:3171-3176