miRBase entry: aae-mir-9b

Stem-loop aae-mir-9b


Accession
MI0013530
Description
Aedes aegypti aae-mir-9b precursor miRNA
Gene family
MIPF0000014; mir-9

Literature search
3 open access papers mention aae-mir-9b
(12 sentences)

Sequence

1001 reads, 52 reads per million, 2 experiments
ucacguuuauuggaUCUUUGGUGAUUUUAGCUGUAUGCugauacguuucugauugcauauagcuuuaucaccaaaaaccuaaugaaugguga
(((((((((((((...(((((((((...((((((((((................))))))))))..)))))))))...))))))))).))))

Structure
    -         aUC         UUU          ugauacg 
ucac guuuauugg   UUUGGUGAU   AGCUGUAUGC       u
|||| |||||||||   |||||||||   ||||||||||        
agug uaaguaauc   aaaccacua   ucgauauacg       u
    g         caa         -uu          uuagucu 


Annotation confidence Not enough data
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Genome context
supercont1.785: 213570-213661 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from aae-mir-9b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aae-miR-9b

Accession MIMAT0014324
Description Aedes aegypti aae-miR-9b mature miRNA
Sequence 15 - UCUUUGGUGAUUUUAGCUGUAUGC - 38
Evidence experimental
454 [1]

References

  1. PubMed ID: 19961592
    Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
    Li S, Mead EA, Liang S, Tu Z
    BMC Genomics (2009) 10:581