Stem-loop aae-mir-309b

Accession

MI0013526

Description

Aedes aegypti aae-mir-309b precursor miRNA

Gene family

MIPF0000140; mir-3

Literature search

2 open access papers mention aae-mir-309b
(3 sentences)

Sequence

6 reads, 1 reads per million, 2 experiments

uuaugCGUCAAACUCCGUUCAGUUGGUGgagucauuuuccaagucaUCACUGGGCAUAGUUUGUCGCAuaa
.((((((.((((((..(((((((((((((((.....)))))..)))..)))))))..)))))).)))))).

Structure

u      U      CC       --   --     u 
 uaugCG CAAACU  GUUCAGU  UGG  UGgag c
 |||||| ||||||  |||||||  |||  ||||| a
 auACGC GUUUGA  CGGGUCA  acu  accuu u
a      U      UA       CU   ga     u 

Annotation confidence Not enough data

Genome context

supercont1.464: 825629-825699 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from aae-mir-309b

Mature aae-miR-309b-5p

• Accession: MIMAT0014319
• Description: Aedes aegypti aae-miR-309b-5p mature miRNA
• Sequence: 6 - CGUCAAACUCCGUUCAGUUGGUG - 28
• Evidence: experimental ; 454 [1]

Mature aae-miR-309b-3p

• Accession: MIMAT0014320
• Description: Aedes aegypti aae-miR-309b-3p mature miRNA
• Sequence: 47 - UCACUGGGCAUAGUUUGUCGCA - 68
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581