miRBase entry: aae-mir-2944b

Stem-loop aae-mir-2944b


Accession
MI0013510
Description
Aedes aegypti aae-mir-2944b precursor miRNA
Gene family
MIPF0001335; mir-2944

Literature search
4 open access papers mention aae-mir-2944b
(6 sentences)

Sequence

244 reads, 13 reads per million, 2 experiments
aucGAAGGAACUCCCGGUGUGAUAUAugacucgauuaUAUCACAGCAGUAGUUACCUGAuau
.....(((((((.(.(.(((((((((.........))))))))).).).)))).))).....

Structure
aucGA   -    C C G         uga 
     AGG AACU C G UGUGAUAUA   c
     ||| |||| | | |||||||||   u
     UCC UUGA G C ACACUAUau   c
uauAG   A    U A G         uag 


Annotation confidence Not enough data
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Genome context
supercont1.464: 825313-825374 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from aae-mir-2944b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aae-miR-2944b-5p

Accession MIMAT0014304
Description Aedes aegypti aae-miR-2944b-5p mature miRNA
Sequence 4 - GAAGGAACUCCCGGUGUGAUAUA - 26
Evidence experimental
454 [1]

Mature aae-miR-2944b-3p

Accession MIMAT0015373
Description Aedes aegypti aae-miR-2944b-3p mature miRNA
Sequence 38 - UAUCACAGCAGUAGUUACCUGA - 59
Evidence experimental
454 [1]

References

  1. PubMed ID: 19961592
    Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
    Li S, Mead EA, Liang S, Tu Z
    BMC Genomics (2009) 10:581