miRBase entry: aae-mir-2944a

Stem-loop aae-mir-2944a


Accession
MI0013509
Description
Aedes aegypti aae-mir-2944a precursor miRNA
Gene family
MIPF0001335; mir-2944


Sequence

14 reads, 1 reads per million, 2 experiments
cguuGAAGGAACUUCUGCUGUGAUCUGAguuagauacaUAUCACAGUAGUUGUACUUUAAug
((((((((..((..((((((((((.((.........)).))))))))))..)).))))))))

Structure
        GA  UU          C  Agu 
cguuGAAG  AC  CUGCUGUGAU UG   u
||||||||  ||  |||||||||| ||   a
guAAUUUC  UG  GAUGACACUA ac   g
        -A  UU          U  aua 


Annotation confidence Not enough data
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Genome context
supercont1.464: 825450-825511 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from aae-mir-2944a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aae-miR-2944a-5p

Accession MIMAT0014302
Description Aedes aegypti aae-miR-2944a-5p mature miRNA
Sequence 5 - GAAGGAACUUCUGCUGUGAUCUGA - 28
Evidence experimental
454 [1]

Mature aae-miR-2944a-3p

Accession MIMAT0014303
Description Aedes aegypti aae-miR-2944a-3p mature miRNA
Sequence 39 - UAUCACAGUAGUUGUACUUUAA - 60
Evidence experimental
454 [1]

References

  1. PubMed ID: 19961592
    Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
    Li S, Mead EA, Liang S, Tu Z
    BMC Genomics (2009) 10:581