Stem-loop aae-mir-210

Accession

MI0013499

Description

Aedes aegypti aae-mir-210 precursor miRNA

Gene family

MIPF0000086; mir-210

Literature search

4 open access papers mention aae-mir-210
(20 sentences)

Sequence

129109 reads, 6560 reads per million, 2 experiments

cucauugcagcugcugaccacugcacaagauuagauuaugacuCUUGUGCGUGUGACAACGGcuauug
........(((((.((..(((((((((((((((.....))).))))))))).))).)).)))))....

Structure

cucauugc     c  ac   -         -   g 
        agcug ug  cac ugcacaaga uua a
        ||||| ||  ||| ||||||||| ||| u
        ucGGC AC  GUG GCGUGUUCu agu u
----guua     A  -A   U         c   a 

Annotation confidence Not enough data

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

supercont1.512: 515644-515711 [-]

Mature aae-miR-210

• Accession: MIMAT0014293
• Description: Aedes aegypti aae-miR-210 mature miRNA
• Sequence: 44 - CUUGUGCGUGUGACAACGG - 62
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119