miRBase entry: aae-mir-124

Stem-loop aae-mir-124


Accession
MI0013488
Description
Aedes aegypti aae-mir-124 precursor miRNA
Gene family
MIPF0000021; mir-124

Literature search
1 open access papers mention aae-mir-124
(4 sentences)

Sequence

284646 reads, 14774 reads per million, 2 experiments
uuuucuccugguauccacugccggccuauauguccuauuucgguacucaUAAGGCACGCGGUGAAUGCcaagagcg
....(((.((((((.((((((..((((((..((((......)).))..)).))))..)))))).)))))).)))..

Structure
uuuu   c      c      cg    -  au  -  ua 
    cuc ugguau cacugc  gccu au  gu cc  u
    ||| |||||| ||||||  |||| ||  || ||   
    gag acCGUA GUGGCG  CGGA Ua  ca gg  u
--gc   a      A      CA    A  cu  u  cu 


Annotation confidence Not enough data
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Comments
This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context
supercont1.6: 1664615-1664690 [-]

Database links

Mature aae-miR-124

Accession MIMAT0014282
Description Aedes aegypti aae-miR-124 mature miRNA
Sequence 50 - UAAGGCACGCGGUGAAUGC - 68
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 19961592
    Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
    Li S, Mead EA, Liang S, Tu Z
    BMC Genomics (2009) 10:581

  2. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119