miRBase entry: aae-mir-133

Stem-loop aae-mir-133


Accession
MI0013482
Description
Aedes aegypti aae-mir-133 precursor miRNA
Gene family
MIPF0000029; mir-133


Sequence

3426 reads, 179 reads per million, 2 experiments
cucggaaucgcugaauauagcugguugacuucgggucaaaucgucaaauauuugcaaagauauuuccucagugaaaucauUUGGUCCCCUUCAACCAGCUGUagcagugaugcauuaca
......(((((((..(((((((((((((....(((((((((..((((((((((....))))))).......)))....)))))).)))..))))))))))))).)))))))........

Structure
--cucgga       aa             cuuc   -      --cg   -------       g 
        aucgcug  uauagcugguuga    ggg ucaaau    uca       aauauuu c
        |||||||  |||||||||||||    ||| ||||||    |||       |||||||  
        uagugac  aUGUCGACCAACU    CCC GGUUua    agu       uuauaga a
acauuacg       -g             --UC   U      cuaa   gacuccu       a 


Annotation confidence Not enough data
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Comments
This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context
supercont1.778: 350289-350407 [-]

Database links

Mature aae-miR-133

Accession MIMAT0014275
Description Aedes aegypti aae-miR-133 mature miRNA
Sequence 81 - UUGGUCCCCUUCAACCAGCUGU - 102
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 19961592
    Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
    Li S, Mead EA, Liang S, Tu Z
    BMC Genomics (2009) 10:581

  2. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119