Stem-loop aae-mir-999

Accession

MI0013464

Description

Aedes aegypti aae-mir-999 precursor miRNA

Gene family

MIPF0000852; mir-999

Literature search

1 open access papers mention aae-mir-999
(1 sentences)

Sequence

27996 reads, 1413 reads per million, 2 experiments

gcagggacgcggucgugcaggaaauuauuuggcauuagauucaaaUGUUAACUGUAAGACUGUGUCUuugcgggugauc
((((((((((((((.(((((..(((.((((((........)))))))))..))))).))))))))))))))........

Structure

--------              g     ga   u      cau 
        gcagggacgcgguc ugcag  aau auuugg   u
        |||||||||||||| |||||  ||| ||||||    
        cguuUCUGUGUCAG AUGUC  UUG Uaaacu   a
cuaguggg              A     AA   -      uag 

Annotation confidence High

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

supercont1.100: 2315100-2315178 [+]

Mature aae-miR-999

• Accession: MIMAT0014257
• Description: Aedes aegypti aae-miR-999 mature miRNA
• Sequence: 46 - UGUUAACUGUAAGACUGUGUCU - 67
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119