miRBase entry: aae-mir-1

Stem-loop aae-mir-1


Accession
MI0013455
Description
Aedes aegypti aae-mir-1 precursor miRNA
Gene family
MIPF0000038; mir-1

Literature search
7 open access papers mention aae-mir-1
(15 sentences)

Sequence

10325877 reads, 530586 reads per million, 2 experiments
cgaaaguuccaugcuuccuugcauucaauagugauucugaaagcauaUGGAAUGUAAAGAAGUAUGGAGcgcucgg
(((..((((((((((((.((((((((.(((((..........)).))).)))))))).))))))))))))..))).

Structure
-   aa            c        a   -  gauu 
 cga  guuccaugcuuc uugcauuc aua gu    c
 |||  |||||||||||| |||||||| ||| ||     
 gcu  cGAGGUAUGAAG AAUGUAAG Uau cg    u
g   cg            A        G   a  aaag 


Annotation confidence Not enough data
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Comments
This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context
supercont1.812: 291326-291401 [+]

Database links

Mature aae-miR-1

Accession MIMAT0014244
Description Aedes aegypti aae-miR-1 mature miRNA
Sequence 48 - UGGAAUGUAAAGAAGUAUGGAG - 69
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 19961592
    Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
    Li S, Mead EA, Liang S, Tu Z
    BMC Genomics (2009) 10:581

  2. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119