miRBase entry: rco-MIR398a

Stem-loop rco-MIR398a


Accession
MI0013420
Description
Ricinus communis rco-MIR398a precursor miRNA
Gene family
MIPF0000107; MIR398

Literature search
2 open access papers mention rco-MIR398a
(6 sentences)

Sequence

ccagaggaguggcucccugagaacacacgugcauuggcucucaccuuuuguaguuccacugcaccUGUGUUCUCAGGUCACCCCUUugggg
(((((((.((((...((((((((((((.(((((.(((..((((.....)).))..))).))))).)))))))))))))))).)))))))..

Structure
--       a    cuc            c     u   cu  -  c 
  ccagagg gugg   ccugagaacaca gugca ugg  cu ca c
  ||||||| ||||   |||||||||||| ||||| |||  || || u
  gguUUCC CACU   GGACUCUUGUGU cacgu acc  ga gu u
gg       C    ---            c     c   uu  u  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
EQ973775.1: 3280015-3280105 [+]

Database links

Mature rco-miR398a

Accession MIMAT0014194
Description Ricinus communis rco-miR398a mature miRNA
Sequence 66 - UGUGUUCUCAGGUCACCCCUU - 86
Evidence experimental
RT-PCR [1]

References

  1. PubMed ID: 19942686
    Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants
    "Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M"
    "Nucleic Acids Res (2010) 38:981-995