miRBase entry: rco-MIR396

Stem-loop rco-MIR396


Accession
MI0013418
Description
Ricinus communis rco-MIR396 precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
2 open access papers mention rco-MIR396
(5 sentences)

Sequence

ugcuuUUCCACAGCUUUCUUGAACUUcuucuucuucuucuucuucuucuuagauuucuuucucauugccuauaucuuucuugauguggcacagaauaaguucaagaaagcugugggagaacaug
((.(((((((((((((((((((((((.((((...................(((......)))...((((.(((((......))))))))).)))).))))))))))))))))))))))).))..

Structure
--  c                       c    ucuucuucuucuucuucuuagauuucuuucucau    u     uu 
  ug uuUUCCACAGCUUUCUUGAACUU uucu                                  ugcc auauc  u
  || ||||||||||||||||||||||| ||||                                  |||| |||||   
  ac agagggugucgaaagaacuugaa aaga                                  acgg uguag  c
gu  a                       u    ---------------------------------c    -     uu 


Annotation confidence Not enough data
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Genome context
EQ973818.1: 920136-920259 [+]

Database links

Mature rco-miR396

Accession MIMAT0014192
Description Ricinus communis rco-miR396 mature miRNA
Sequence 6 - UUCCACAGCUUUCUUGAACUU - 26
Evidence experimental
RT-PCR [1]

References

  1. PubMed ID: 19942686
    Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants
    "Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M"
    "Nucleic Acids Res (2010) 38:981-995