miRBase entry: rco-MIR169b

Stem-loop rco-MIR169b


Accession
MI0013396
Description
Ricinus communis rco-MIR169b precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
2 open access papers mention rco-MIR169b
(6 sentences)

Sequence

uaauuCAGCCAAGGAUGACUUGCCGGcacagccuauauaugucuucuacucacagcugcuagcuaccggcaaguuguucuuggcuacauugua
......((((((((((((((((((((...(((.......(((.........))).......))).))))))))))))))))))))........

Structure
--uaauuC                    cac   cuauaua   cuu 
        AGCCAAGGAUGACUUGCCGG   agc       ugu   c
        ||||||||||||||||||||   |||       |||   u
        ucgguucuuguugaacggcc   ucg       aca   a
auguuaca                    --a   aucgucg   cuc 


Annotation confidence Not enough data
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Genome context
EQ974072.1: 117879-117971 [-]

Database links

Mature rco-miR169b

Accession MIMAT0014170
Description Ricinus communis rco-miR169b mature miRNA
Sequence 6 - CAGCCAAGGAUGACUUGCCGG - 26
Evidence experimental
RT-PCR [1]

References

  1. PubMed ID: 19942686
    Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants
    "Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M"
    "Nucleic Acids Res (2010) 38:981-995