Stem-loop sequence ath-MIR2939

Accession

MI0013369 (change log)

Description

Arabidopsis thaliana miR2939 stem-loop

Literature search

1 open access papers mention ath-MIR2939
(14 sentences)

Stem-loop

   gu     --cc   a    u c   a     a    u        --         a      a 
5'   uguca    guu gucu u acu cgaug cuua uguugugu  uaccaaaga aacaua g
     |||||    ||| |||| | ||| ||||| |||| ||||||||  ||||||||| |||||| g
3'   acggu    caa caga a uga gcuac gaau acaacacg  augguuucu uugugu c
   -c     aaaa   -    c u   c     c    c        ca         g      u 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr5: 19566960-19567084 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ath-MIR2939

• ath-MIR2939: chr5: 19566960-19567084 [+]
• ath-MIR4243: chr5: 19567208-19567386 [+]

Database links

• miRBase Tracker:MI0013369

Mature sequence ath-miR2939

• Accession: MIMAT0014143
• Sequence: 79 - uaacgcacaacacuaagccau - 99
• Evidence: experimental; 454 [1]

References

1. PMID:20042113 "MicroRNA and tasiRNA diversity in mature pollen of Arabidopsis thaliana" Grant-Downton R, Le Trionnaire G, Schmid R, Rodriguez-Enriquez J, Hafidh S, Mehdi S, Twell D, Dickinson H BMC Genomics. 10:643(2009).