Stem-loop sequence ath-MIR2937

Accession

MI0013367 (change log)

Description

Arabidopsis thaliana miR2937 stem-loop

Literature search

1 open access papers mention ath-MIR2937
(1 sentences)

Stem-loop

          ------   -ua     c       c       a   c       g  u   c                               a      a                      c        c    cuacaaaaca       c            aa   -aa                gcuagugaggccaguaccguaguuaauauu 
5' cauuuuc      cgu   guaac uauuggc auuugau acu caacaag ac aau aaacgagaaccauuugaugauguuaauggug aacaca gacccaucagcaaacucuccuc aaugguca acca          uuagauc uuuaaugacucc  caa   cucuuaugaugugggu                              g
   |||||||      |||   ||||| ||||||| ||||||| ||| ||||||| || ||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||| ||||          ||||||| ||||||||||||  |||   ||||||||||||||||                              a
3' guaaaag      gua   cauug auaaccg uaaacua uga guuguuu ug uua uuugcucuugguaaacuacuauaauuacuac uugugu cuggguaguuguuugggaggag uuacuagu uggu          aaucuag aaauuacugagg  guu   gagaauacuacaccua                              u
          caccau   ucg     u       a       c   u       a  c   a                               g      g                      a        u    ----------       a            aa   guc                aagaaaacaucugucagucugguuuuugug 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr5: 13622416-13622838 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0013367

Mature sequence ath-miR2937

• Accession: MIMAT0014141
• Sequence: 254 - auaagagcuguugaaggaguc - 274
• Evidence: experimental; 454 [1]

References

1. PMID:20042113 "MicroRNA and tasiRNA diversity in mature pollen of Arabidopsis thaliana" Grant-Downton R, Le Trionnaire G, Schmid R, Rodriguez-Enriquez J, Hafidh S, Mehdi S, Twell D, Dickinson H BMC Genomics. 10:643(2009).