miRBase entry: ath-MIR2936

Stem-loop ath-MIR2936


Accession
MI0013366
Description
Arabidopsis thaliana ath-MIR2936 precursor miRNA

Literature search
1 open access papers mention ath-MIR2936
(2 sentences)

Sequence

ccauuuucgaaagcCUUGAGAGAGAGAACACAGACGauaccaacuuucuucaaucucguugccgcaguauaauuaucucauuccucggauauaucucuccuucugcggcggcgacaagaagcuacaagaauaaaaagucuguuuucucucuuuucaagaaaccacuuacuucgaaaaugg
(((((((((((...((((((((((((((.((((((........(((.((((....((((((((((((..............((....)).............))))))))))))...))))....)))........)))))).))))))).)))))))...........)))))))))))

Structure
           --------agc       -       C      Gauaccaa   ---u    aauc            uauaauuaucucau  c 
ccauuuucgaa           CUUGAGA GAGAGAA ACAGAC        cuu    cuuc    ucguugccgcag              uc u
|||||||||||           ||||||| ||||||| ||||||        |||    ||||    ||||||||||||              ||  
gguaaaagcuu           gaacuuu cucucuu ugucug        gaa    gaag    agcggcggcguc              ag c
           cauucaccaaa       u       u      aaaaauaa   cauc    -aac            -uuccucucuauau  g 


Annotation confidence Not enough data
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Genome context
chr4: 1046804-1046983 [-]

Database links

Mature ath-miR2936

Accession MIMAT0014140
Description Arabidopsis thaliana ath-miR2936 mature miRNA
Sequence 15 - CUUGAGAGAGAGAACACAGACG - 36
Evidence experimental
454 [1]

References

  1. PubMed ID: 20042113
    MicroRNA and tasiRNA diversity in mature pollen of Arabidopsis thaliana
    Grant-Downton R, Le Trionnaire G, Schmid R, Rodriguez-Enriquez J, Hafidh S, Mehdi S, Twell D, Dickinson H
    BMC Genomics (2009) 10:643