Stem-loop sequence ath-MIR2934

AccessionMI0013364 (change log)
DescriptionArabidopsis thaliana miR2934 stem-loop
Gene family MIPF0001269; MIR2934
Literature search

2 open access papers mention ath-MIR2934
(5 sentences)

Stem-loop 
   uuuau     c                    u      -------------u    ucau       a 
5'      aaccu uuucugcaaacgccuuggau uucuuu              ggcu    guuguuc u
        ||||| |||||||||||||||||||| ||||||              ||||    |||||||  
3'      uugga aaagauguuuguggaaccua aagaaa              ccga    uaauaag u
   aaacu     a                    c      uuuauucuacuuuu    ----       a
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (TAIR10; GCA_000001735.1) Overlapping transcripts
chr3: 5500032-5500152 [-]
intergenic
Clustered miRNAs
< 10kb from ath-MIR2934
ath-MIR782chr3: 5500037-5500147 [+]
ath-MIR2934chr3: 5500032-5500152 [-]
ath-MIR5023chr3: 5496985-5497119 [-]
Database links

Mature sequence ath-miR2934-5p

Accession MIMAT0014138
Previous IDsath-miR2934
Sequence

10 -  

ucuuucugcaaacgccuugga

 - 30

Get sequence
Evidence experimental; 454 [1]

Mature sequence ath-miR2934-3p

Accession MIMAT0020364
Sequence

90 -  

cauccaagguguuuguagaaa

 - 110

Get sequence
Evidence experimental; Illumina [2]

References

1
PMID:20042113 "MicroRNA and tasiRNA diversity in mature pollen of Arabidopsis thaliana" Grant-Downton R, Le Trionnaire G, Schmid R, Rodriguez-Enriquez J, Hafidh S, Mehdi S, Twell D, Dickinson H BMC Genomics. 10:643(2009).
2
PMID:21357774 "MicroRNA activity in the Arabidopsis male germline" Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD J Exp Bot. 62:1611-1620(2011).