miRBase entry: api-mir-993

Stem-loop api-mir-993


Accession
MI0013361
Description
Acyrthosiphon pisum api-mir-993 precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

cauccgugaucuacccuguagauccgggcuuuuguagaauaaucgauauguucaGAAGCUCGUCUCUACAGGUAUCUuacggauggaa
(((((((((..((((.((((((..((((((((((....(((.....)))...))))))))))..))))))))))..)))))))))...

Structure
---         uc    c      uc          uaga   a 
   cauccguga  uacc uguaga  cgggcuuuug    aua u
   |||||||||  |||| ||||||  ||||||||||    ||| c
   guaggcauU  AUGG ACAUCU  GCUCGAAGac    uau g
aag         CU    -      CU          -uug   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GL349666.1: 1740245-1740332 [+]

Database links

Mature api-miR-993

Accession MIMAT0014135
Description Acyrthosiphon pisum api-miR-993 mature miRNA
Sequence 55 - GAAGCUCGUCUCUACAGGUAUCU - 77
Evidence experimental
Illumina [2]

References

  1. Computational identification of microRNA homologs from Acyrthosiphon pisum (pea aphid)
    "Sathyamurthy G, Swamy NR"
    J Comp Intell Bioinf (2009) 2:109-119

  2. PubMed ID: 20444247
    Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
    Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
    BMC Genomics (2010) 11:281