Stem-loop bma-mir-228

Accession

MI0013346

Description

Brugia malayi bma-mir-228 precursor miRNA

Gene family

MIPF0000122; mir-263

Literature search

1 open access papers mention bma-mir-228
(2 sentences)

Sequence

ugcuggcacauacucAAUGGCACUAGAUGAAUUCACGGuucaccucuccuauccguguauucgccaguuccauagagcugugcaagua
((((.(((((..(((.((((.(((.(.(((((.(((((..............))))).)))))).))).)))).))).))))).))))

Structure

    g     ua   A    C   A A     U     uucacc 
ugcu gcaca  cuc AUGG ACU G UGAAU CACGG      u
|||| |||||  ||| |||| ||| | ||||| |||||       
auga cgugu  gag uacc uga c gcuua gugcc      c
    a     -c   a    u   c -     u     uauccu 

Annotation confidence Not enough data

Genome context

Bmal_v3_scaffold9: 494383-494470 [+]

Mature bma-miR-228

• Accession: MIMAT0014120
• Description: Brugia malayi bma-miR-228 mature miRNA
• Sequence: 16 - AAUGGCACUAGAUGAAUUCACGG - 38
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19874857
   Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
   "Poole CB, Davis PJ, Jin J, McReynolds LA"
   "Mol Biochem Parasitol (2010) 169:87-94


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498