miRBase entry: bma-mir-100d

Stem-loop bma-mir-100d


Accession
MI0013341
Description
Brugia malayi bma-mir-100d precursor miRNA

Literature search
2 open access papers mention bma-mir-100d
(18 sentences)

Sequence

uguuggugugugaccUACCCGUAGCUCCGAAUAUGUGugggacaaauugcacaacacauaucgguccacgggaaagccacacauugacuga
.(((((((((((.(...(((((.(..((((.(((((((.(..((...))..).)))))))))))..))))))...).)))))))))))...

Structure
--u           a cUA     A CU    A       g ga  a 
   guuggugugug c   CCCGU G  CCGA UAUGUGu g  ca  
   ||||||||||| |   ||||| |  |||| ||||||| |  || a
   caguuacacac g   gggca c  ggcu auacaca c  gu  
agu           c aaa     - cu    -       a ac  u 


Annotation confidence Not enough data
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Genome context
Bmal_v3_scaffold84: 110616-110706 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bma-mir-100d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bma-miR-100d

Accession MIMAT0014115
Description Brugia malayi bma-miR-100d mature miRNA
Sequence 16 - UACCCGUAGCUCCGAAUAUGUG - 37
Evidence experimental
cloned [1], Illumina [2]

References

  1. PubMed ID: 19874857
    Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
    "Poole CB, Davis PJ, Jin J, McReynolds LA"
    "Mol Biochem Parasitol (2010) 169:87-94

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498