Stem-loop bma-mir-9

Accession

MI0013326

Description

Brugia malayi bma-mir-9 precursor miRNA

Gene family

MIPF0000014; mir-9

Literature search

3 open access papers mention bma-mir-9
(9 sentences)

Sequence

guauugcaacuuuaCUUUGGUUAUCUAGCUGUAUGAguaaguuacuggcuucAUAAAGCUAGGUUACCAAAGCUaagcacaauac
((((((...(((..(((((((.((((((((.(((((((.........)).))))).)))))))).)))))))..)))..))))))

Structure

      caa   ua       U        G     -  aag 
guauug   cuu  CUUUGGU AUCUAGCU UAUGA gu   u
||||||   |||  ||||||| |||||||| ||||| ||   u
cauaac   gaa  GAAACCA UGGAUCGA AUAcu cg   a
      -ac   UC       U        A     u  guc 

Annotation confidence Not enough data

Genome context

Bmal_v3_scaffold1: 3047960-3048044 [-]

Mature bma-miR-9-5p

• Accession: MIMAT0014100
• Description: Brugia malayi bma-miR-9-5p mature miRNA
• Sequence: 15 - CUUUGGUUAUCUAGCUGUAUGA - 36
• Evidence: experimental ; Illumina [2]

Mature bma-miR-9-3p

• Accession: MIMAT0014108
• Description: Brugia malayi bma-miR-9-3p mature miRNA
• Sequence: 53 - AUAAAGCUAGGUUACCAAAGCU - 74
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19874857
   Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
   "Poole CB, Davis PJ, Jin J, McReynolds LA"
   "Mol Biochem Parasitol (2010) 169:87-94


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498