miRBase entry: csi-MIR162

Stem-loop csi-MIR162


Accession
MI0013314
Description
Citrus sinensis csi-MIR162 precursor miRNA
Gene family
MIPF0000127; MIR162_1

Literature search
1 open access papers mention csi-MIR162
(8 sentences)

Sequence

aaacuguuuacacugaucugugcugcugauaaaucuuaauuuuuuuuuugaauuuuuauuuaacagaaaauagagagagugaagucacUGGAGGCAGCGGUUCAUCGAUCacuuugugcaaauuuuguugugaaaaauaacacaaaauacaugaaucgaUCGAUAAACCUCUGCAUCCAGcgcucacuccaacucuauuc
..........(((......)))...(((.(((((...(((((.......)))))...))))).)))..(((((((.((((((.(.(.(((((.((((.((((.(((((((..((((((...(((((((.((........))))))))).))))))..))))))).)))).)))).))))).))))))))...))))))).

Structure
aaacuguuuacacugaucugugcugcugauaaaucuuaauuuuuuuuuugaauuuuuauuuaacagaa       --a      a u a     G    C    C       ac      caa       u  gaa 
                                                                    aauagag   gaguga g c cUGGA GCAG GGUU AUCGAUC  uuugug   auuuugu gu   a
                                                                    |||||||   |||||| | | ||||| |||| |||| |||||||  ||||||   ||||||| ||    
                                                                    uuaucuc   cucacu c g GACCU CGUC CCAA UAGCUag  aaguac   uaaaaca ca   a
-------------------------------------------------------------------c       aac      - - c     A    U    A       cu      --a       -  aua 


Annotation confidence Not enough data
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Genome context
JH999183.1: 24505-24704 [+]

Database links

Mature csi-miR162-5p

Accession MIMAT0017388
Description Citrus sinensis csi-miR162-5p mature miRNA
Sequence 89 - UGGAGGCAGCGGUUCAUCGAUC - 110
Evidence experimental
Illumina [2-3]

Mature csi-miR162-3p

Accession MIMAT0014088
Description Citrus sinensis csi-miR162-3p mature miRNA
Sequence 160 - UCGAUAAACCUCUGCAUCCAG - 180
Evidence experimental
Illumina [2-3]

References

  1. PubMed ID: 19585144
    Identification and characterization of 27 conserved microRNAs in citrus
    "Song C, Fang J, Li X, Liu H, Thomas Chao C"
    "Planta (2009) 230:671-685

  2. PubMed ID: 20398412
    Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
    Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
    BMC Genomics (2010) 11:246

  3. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113