Stem-loop crt-MIR168

Accession

MI0013312

Description

Citrus reticulata crt-MIR168 precursor miRNA

Gene family

MIPF0000081; MIR168

Sequence

aguuaccggcggucucuaauUCGCUUGGUGCAGGUCGGGAAcugauuggcuaguuuuuuuuugaaauuuuuugacagcgagguggcguguuguaauuggucgucacguuuaaauuaaugauugaaaaaaaugcgaauuggaucccgccuugcaucaacugaaucggagaccgaggugagagauuggauggauauuuaccuu
.........((((((((.(((((.((((((((((.(((((.((((((.((..(((((((((...((((..((((....((.((((((.............)))))).))....)))).))))))))))))))).)))))).))))).)))))))))).))))).))))))))(((((((..(((.....))).))))))).

Structure

--------------------aguuaccgg        a     C          U     A      g  ua         uga    uu    cagc  g      uguug 
                             cggucucu auUCG UUGGUGCAGG CGGGA cugauu gc  guuuuuuuu   aauu  uuga    ga guggcg     u
                             |||||||| ||||| |||||||||| ||||| |||||| ||  |||||||||   ||||  ||||    || ||||||     a
                             gccagagg uaagu aacuacguuc gcccu gguuaa cg  uaaaaaaag   uuag  aauu    uu cacugc     a
uuccauuuauagguagguuagagagugga        c     c          c     a      g  --         ---    -u    aaau  g      ugguu 

Annotation confidence Not enough data

Genome context

Unknown

Mature crt-miR168

• Accession: MIMAT0014086
• Description: Citrus reticulata crt-miR168 mature miRNA
• Sequence: 21 - UCGCUUGGUGCAGGUCGGGAA - 41
• Evidence: not_experimental

References

1. PubMed ID: 19585144
   Identification and characterization of 27 conserved microRNAs in citrus
   "Song C, Fang J, Li X, Liu H, Thomas Chao C"
   "Planta (2009) 230:671-685