Stem-loop ccl-MIR167b

Accession

MI0013309

Description

Citrus clementina ccl-MIR167b precursor miRNA

Gene family

MIPF0000023; MIR167_1

Sequence

auucgugcacuaguaguaguUGAAGCUGCCAGCAUGAUCUGAacuuuccuugaccuccaucucuagggaaaggccagaucaucuggcaguuucaccuauugaugguagcauggccagaaacccuaauuucuucuccuccaccagaucguucucaacaaacccaguagguuuuggcagaugaaaaacccuagaaacagguauc
...(((((((((.((((((.((((((((((((.((((((((..((((((((((........)).))))))))..)))))))))))))))))))).)))))).)))).)))))(((((((..((((..............((......))...............)))))))))))...........(((......)))....

Structure

---------------------------------------------------------------------------------------auu     -    g      u            C        Aa        -  ccu 
                                                                                          cgugc acua uaguag UGAAGCUGCCAG AUGAUCUG  cuuuccuu ga   c
                                                                                          ||||| |||| |||||| |||||||||||| ||||||||  |||||||| ||    
                                                                                          guacg uggu guuauc acuuugacgguc uacuagac  gaaaggga cu   c
cuauggacaaagaucccaaaaaguagacgguuuuggaugacccaaacaacucuugcuagaccaccuccucuucuuuaaucccaaagaccg     a    a      c            -        cg        u  cua 

Annotation confidence Not enough data

Genome context

Unknown

Mature ccl-miR167b

• Accession: MIMAT0014083
• Description: Citrus clementina ccl-miR167b mature miRNA
• Sequence: 21 - UGAAGCUGCCAGCAUGAUCUGA - 42
• Evidence: not_experimental

References

1. PubMed ID: 19585144
   Identification and characterization of 27 conserved microRNAs in citrus
   "Song C, Fang J, Li X, Liu H, Thomas Chao C"
   "Planta (2009) 230:671-685