Stem-loop ctr-MIR171

Accession

MI0013308

Description

Citrus trifoliata ctr-MIR171 precursor miRNA

Gene family

MIPF0000030; MIR171_1

Literature search

2 open access papers mention ctr-MIR171
(4 sentences)

Sequence

aucgacgguugaaggggagaguuguaaaaugaaaucaucaagguauuggcgcgccucaauuuaaagacgugguuaaaugggcaugauuagccauguauuuucaUUGAGCCGCGUCAAUAUCUCCuuaauuauuuuguaacucucuccucuauauccucgccuucgguaugcagcugcuccucgauacauaugaggauucagaaacagacaaaggcgguagaaguaaucuucaucaauauuauugaagcaggaaacauaacggcaaguuuuaagacccguuuggggcauguggggucucauuuugauguuaaugaagugaaaacuuguauuuucccucaaacauucacucacuccaggccggcaggaacaac
.....(((((..((((((((((((((((((((........((((........))))..........((((((((((..........))))))))))................................))))))))))))))))))))........(((((((..((.((...(((.((((((.......))))))..)))...)).)).)))))))..((((....)))).(((((...)))))....(((((.......(((((((((.((((((..............))))))((((((.((....)))))))))))))))))..))))).....................)))))...........

Structure

------aucga     -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ga                    aaucaucaagguauuggcgcgccucaauuuaaagacgugguuaaaug 
           cgguu                                                                                                                                                                                                               aggggagaguuguaaaauga                                               g
           |||||                                                                                                                                                                                                               ||||||||||||||||||||                                                
           gccgg                                                                                                                                                                                                               uccucucucaauguuuuauu                                               g
caacaaggacg     accucacucacuuacaaacucccuuuuauguucaaaagugaaguaauuguaguuuuacucugggguguacgggguuugcccagaauuuugaacggcaauacaaaggacgaaguuauuauaacuacuucuaaugaagauggcggaaacagacaaagacuuaggaguauacauagcuccucgucgacguauggcuuccgcuccuauauc                    aauuCCUCUAUAACUGCGCCGAGUUacuuuuauguaccgauuaguac 

Annotation confidence Not enough data

Genome context

Unknown

Mature ctr-miR171

• Accession: MIMAT0014082
• Description: Citrus trifoliata ctr-miR171 mature miRNA
• Sequence: 104 - UUGAGCCGCGUCAAUAUCUCC - 124
• Evidence: not_experimental

References

1. PubMed ID: 19585144
   Identification and characterization of 27 conserved microRNAs in citrus
   "Song C, Fang J, Li X, Liu H, Thomas Chao C"
   "Planta (2009) 230:671-685