Stem-loop ctr-MIR164

Accession

MI0013306

Description

Citrus trifoliata ctr-MIR164 precursor miRNA

Gene family

MIPF0000045; MIR164

Literature search

2 open access papers mention ctr-MIR164
(3 sentences)

Sequence

gaagguguguguagagcaagaUGGAGAAGCAGGGCACGUGCAuuacuaacucaaccgcacauacaucuacuaacaaaaauuaauuaauccacacauuuugaagaaaccaaaucaagaagcaggaggcucuuucuguuguuauagcucagucaugaguugaguuauuucuucaugugcccuucuuccccaucaugaccgcggcaccuugugcguguguguguguguaucaucagggaucagcucaagaucugaauuucuucuuagcaaaauucaugugccaaucuaaagccuaccaaa
...((((.((.((((.((.(((((.((((.((((((((((......(((((((((...........(((.((((((...........(((.....((((((..........))))))....)))...........)))))))))...........)))))))))......)))))))))).)))).))))).)).....(((((((((.((..((.(.((((.....)).)).).))..)).))))...(((((((((....))..))))))).)))))..))))..)).))))...

Structure

gaa    u  -g    --------------------------------------------------------------------------------------g  a     A    C          CAuuac         cgcacauacau   c      aaauuaauuaa   acaca      agaa 
   ggug gu  uaga                                                                                       ca gaUGG GAAG AGGGCACGUG      uaacucaac           cua uaacaa           ucc     uuuuga    a
   |||| ||  ||||                                                                                       || ||||| |||| ||||||||||      |||||||||           ||| ||||||           |||     ||||||     
   ccau cg  aucu                                                                                       gu cuacc cuuc ucccguguac      auugaguug           gau auuguu           agg     agaacu    c
aaa    c  aa    aaccguguacuuaaaacgauucuucuuuaagucuagaacucgacuagggacuacuaugugugugugugugcguguuccacggcgcca  a     c    u          uucuuu         aguacugacuc   -      gucuuucucgg   -acga      aaac 

Annotation confidence Not enough data

Genome context

Unknown

Mature ctr-miR164

• Accession: MIMAT0014080
• Description: Citrus trifoliata ctr-miR164 mature miRNA
• Sequence: 22 - UGGAGAAGCAGGGCACGUGCA - 42
• Evidence: not_experimental

References

1. PubMed ID: 19585144
   Identification and characterization of 27 conserved microRNAs in citrus
   "Song C, Fang J, Li X, Liu H, Thomas Chao C"
   "Planta (2009) 230:671-685