miRBase entry: ccl-MIR396

Stem-loop ccl-MIR396


Accession
MI0013304
Description
Citrus clementina ccl-MIR396 precursor miRNA
Gene family
MIPF0000047; MIR396


Sequence

agagugguccuugaaauagccucuuuguaugggcuuccugcuuaauucuuccucucuaacaucgaguguaaaaugaauggaagaucaucaagccacagauaugagaucugaacauuauuauuauuaaguccuggucaugcuuUUCCACAGCUUUCUUGAACUUccacuguuugcugauuaauacacggcucuugcuagcuaggcgccguauguagacaccgcgcgccaugggagcucaagaaagcugugggagaacauggcacaccuucaggauuug
.....((((((.(((..(((((........)))))...((((...(((((((.(((.......))).(((((..(..((((((.(((..((((..(((((.....))))).....................(((..........)))..))))...))).)))))))..)))))..........((((((((((((..((((((((((..((....)).)).))))).))).)))..))))..))))))))))))...))))....)))))))))..

Structure
agagu      u   auagccucuuuguaugggcuucc    uaa       -----------------------------------------------------------ucucuaacaucgagu     au aa      a   -uc    cacagauaugagaucugaacauuauuauuauuaagucc   ucau 
     gguccu gaa                       ugcu   uucuucc                                                                          guaaa  g  uggaag uca   aagc                                      ugg    g
     |||||| |||                       ||||   |||||||                                                                          |||||  |  |||||| |||   ||||                                      |||     
     uuagga cuu                       acgg   aagaggg                                                                          cguuu  c  accUUC AGU   UUCG                                      ACC    c
---gu      -   -------------------ccac    uac       ugucgaaagaacucgaggguaccgcgcgccacagauguaugccgcggaucgaucguucucggcacauaauuagu     gu --      A   UCU    ------------------------------------AC   UUuu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ccl-miR396

Accession MIMAT0014078
Description Citrus clementina ccl-miR396 mature miRNA
Sequence 143 - UUCCACAGCUUUCUUGAACUU - 163
Evidence experimental
Northern [1]

References

  1. PubMed ID: 19585144
    Identification and characterization of 27 conserved microRNAs in citrus
    "Song C, Fang J, Li X, Liu H, Thomas Chao C"
    "Planta (2009) 230:671-685