miRBase entry: ccl-MIR168

Stem-loop ccl-MIR168


Accession
MI0013299
Description
Citrus clementina ccl-MIR168 precursor miRNA
Gene family
MIPF0000081; MIR168


Sequence

guuaccggcggucucuaauUCGCUUGGUGCAGGUCGGGAAcugauuggcuaguuuuuuuuugaaauuuuuugacagcgagguggcguguuguaauuggucgucacguuuaaauuaaugauugaaaaaaaugcgaauuggaucccgccuugcaucaacugaaucggagaccgaggug
..((((..((((((((.(((((.((((((((((.(((((.((((((.((..(((((((((...((((..((((....((.((((((.............)))))).))....)))).))))))))))))))).)))))).))))).)))))))))).))))).)))))))).))))

Structure
gu    gg        a     C          U     A      g  ua         uga    uu    cagc  g      uguug 
  uacc  cggucucu auUCG UUGGUGCAGG CGGGA cugauu gc  guuuuuuuu   aauu  uuga    ga guggcg     u
  ||||  |||||||| ||||| |||||||||| ||||| |||||| ||  |||||||||   ||||  ||||    || ||||||     a
  gugg  gccagagg uaagu aacuacguuc gcccu gguuaa cg  uaaaaaaag   uuag  aauu    uu cacugc     a
--    -a        c     c          c     a      g  --         ---    -u    aaau  g      ugguu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ccl-miR168

Accession MIMAT0014073
Description Citrus clementina ccl-miR168 mature miRNA
Sequence 20 - UCGCUUGGUGCAGGUCGGGAA - 40
Evidence experimental
Northern [1]

References

  1. PubMed ID: 19585144
    Identification and characterization of 27 conserved microRNAs in citrus
    "Song C, Fang J, Li X, Liu H, Thomas Chao C"
    "Planta (2009) 230:671-685