Stem-loop csi-MIR160a

Accession

MI0013294

Description

Citrus sinensis csi-MIR160a precursor miRNA

Gene family

MIPF0000032; MIR160

Literature search

5 open access papers mention csi-MIR160a
(35 sentences)

Sequence

auuauaccuaugucuauauauuuauaauuauguGCCUGGCUCCCUGUAUGCCAUuugcagagucaaucgaaacaucgauggccuccguggaugGCGUAUGAGGAGCCAUGCAUAuuccauguauaauauauacccauagauau
.......(((((..((((((((((((...((((((.(((((((.((((((((((((((.((((((.((((....))))))).))).)))))))))))))).))))))).))))))....)))).))))))))..)))))....

Structure

auuauac     uc        -    -auu      C       C              a   -   a    a 
       cuaug  uauauauu uaua    auguGC UGGCUCC UGUAUGCCAUuugc gag uca ucga a
       |||||  |||||||| ||||    |||||| ||||||| |||||||||||||| ||| ||| ||||  
       gauac  auauauaa augu    uAUACG ACCGAGG GUAUGCGguaggug cuc ggu agcu c
---uaua     cc        u    accu      U       A              c   c   -    a 

Annotation confidence Not enough data

Genome context

chr7: 28083438-28083580 [-]

Mature csi-miR160a-5p

• Accession: MIMAT0014068
• Description: Citrus sinensis csi-miR160a-5p mature miRNA
• Sequence: 34 - GCCUGGCUCCCUGUAUGCCAU - 54
• Evidence: experimental ; Northern [1], RACE [1], Illumina [2-3]

Mature csi-miR160a-3p

• Accession: MIMAT0037370
• Description: Citrus sinensis csi-miR160a-3p mature miRNA
• Sequence: 94 - GCGUAUGAGGAGCCAUGCAUA - 114
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 19585144
   Identification and characterization of 27 conserved microRNAs in citrus
   "Song C, Fang J, Li X, Liu H, Thomas Chao C"
   "Planta (2009) 230:671-685


2. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


3. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113