miRBase entry: osa-MIR2923

Stem-loop osa-MIR2923


Accession
MI0013265
Description
Oryza sativa osa-MIR2923 precursor miRNA


Sequence

uuacAGACAAAAAUAUAAAUAACAAAgaaauaaacgccuuguaccuacaguacaaagaauuggaaucaaguugggaaauauaagcaccauaccugccuauuaugaacauacuccagauacgaagggacaucuggauaacgcauuugagugucacuaucagguauaggugauuuuu
............((((...((((...((....((..(.((((((.....)))))).)..))....))..))))....))))...(((((((((((................(((((((..........)))))))..((((......))))......))))))).))))......

Structure
----------------------------------------------------------------------------------uuacAGACAAAA    -AAA    AAA  aaua  cg c      c 
                                                                                              AUAU    UAAC   ga    aa  c uuguac u
                                                                                              ||||    ||||   ||    ||  | |||||| a
                                                                                              uaua    guug   cu    uu  g aacaug c
uuuuuaguggauauggacuaucacugugaguuuacgcaauaggucuacagggaagcauagaccucauacaaguauuauccguccauaccacgaa    aagg    -aa  aagg  aa a      a 


Annotation confidence Not enough data
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Genome context
Chr11: 21507096-21507270 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR2923
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR2923

Accession MIMAT0014054
Description Oryza sativa osa-miR2923 mature miRNA
Sequence 5 - AGACAAAAAUAUAAAUAACAAA - 26
Evidence experimental
cloned [1]

References

  1. PubMed ID: 20131478
    Cloning and validation of novel miRNA from basmati rice indicates cross talk between abiotic and biotic stresses
    "Sanan-Mishra N, Kumar V, Sopory SK, Mukherjee SK"
    "Mol Genet Genomics (2009) 282:463-474