miRBase entry: sbi-MIR162

Stem-loop sbi-MIR162


Accession
MI0013252
Description
Sorghum bicolor sbi-MIR162 precursor miRNA
Gene family
MIPF0000169; MIR162_2


Sequence

gggcgcagugguuuaucgaucucuuccuugccuugugcuaguccagaaguaguggugguucaagcguuuauugcugcaauaacuugcaaaacaacgcgggaaucgaUCGAUAAACCUCUGCAUCCAG
(((.((((.((((((((((((..(((((.((.((((((.(((......((((((((((.........))))))))))....))).))...)))).)))))))..)))))))))))).)))).)))..

Structure
--   c    u            uc     u  c    ---  u   ccagaa          uuc 
  ggg gcag gguuuaucgauc  uuccu gc uugu   gc agu      guaguggugg   a
  ||| |||| ||||||||||||  ||||| || ||||   || |||      ||||||||||   a
  CCU CGUC CCAAAUAGCUag  aaggg cg aaca   cg uca      cgucguuauu   g
GA   A    U            cu     -  c    aaa  u   --auaa          ugc 


Annotation confidence Not enough data
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Genome context
chr4: 55732922-55733048 [+]

Database links

Mature sbi-miR162

Accession MIMAT0014041
Description Sorghum bicolor sbi-miR162 mature miRNA
Sequence 107 - UCGAUAAACCUCUGCAUCCAG - 127
Evidence not_experimental

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716