Stem-loop sequence zma-MIR390b

Accession

MI0013244 (change log)

Description

Zea mays miR390b stem-loop

Gene family

MIPF0000101; MIR390

Literature search

13 open access papers mention zma-MIR390b
(97 sentences)

Stem-loop

   -- a         g         cua   ------a    c c      u      ac  a  -   --a       u a                       
5'   g agcucagga ggauagcgc   gga       auca a auagau ggagcc  ga ga gga   gggagaa g gagagagagagacagagcagcu 
     | ||||||||| |||||||||   |||       |||| | |||||| ||||||  || || |||   ||||||| | ||||||||||||||||||||| a
3'   c ucgaguccu ucuaucgcg   ccu       uagu u uaucug ucuugg  cu cu ccu   uucucuu c cucucucucucugucucgucgu 
   ca c         a         aag   agcuaag    a a      -      aa  -  a   agg       u a                       

Deep sequencing

1387 reads, 441 reads per million, 145 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr5: 2846327-2846518 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000075AA21_4577
• miRBase Tracker:MI0013244

Mature sequence zma-miR390b-5p

• Accession: MIMAT0014033
• Previous IDs: zma-miR390b
• Sequence: 2 - aagcucaggagggauagcgcc - 22
• Deep sequencing: 1073 reads, 114 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00005C2DB4_4577

Mature sequence zma-miR390b-3p

• Accession: MIMAT0015367
• Previous IDs: zma-miR390b*
• Sequence: 171 - cgcuaucuauccugagcucca - 191
• Deep sequencing: 124 reads, 9 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000075C643_4577

References

1. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).