Stem-loop zma-MIR827

Accession

MI0013242

Description

Zea mays zma-MIR827 precursor miRNA

Gene family

MIPF0000726; MIR827

Literature search

18 open access papers mention zma-MIR827
(57 sentences)

Sequence

10580 reads, 16585 reads per million, 111 experiments

guUUUGUUGGUGGUCAUUUAACCaugcaugcuucgaucgauggauuggugcaugcauggauuauugcauagugugaugcauguggcgcaucagugcauggUUAGAUGACCAUCAGCAAACAu
..(((((((((((((((((((((((((((((.((((((....)))))).))(((((........)))))....((((((.......)))))))))))))))))))))))))))))))))...

Structure

-gu                           -----------------------------------------  u      g 
   UUUGUUGGUGGUCAUUUAACCaugcau                                         gc ucgauc a
   |||||||||||||||||||||||||||                                         || ||||||  
   AAACGACUACCAGUAGAUUgguacgug                                         cg gguuag u
uAC                           acuacgcgguguacguagugugauacguuauuagguacgua  u      g 

Annotation confidence Not enough data

Genome context

chr5: 171268609-171268730 [-]

Mature zma-miR827-5p

• Accession: MIMAT0015365
• Description: Zea mays zma-miR827-5p mature miRNA
• Sequence: 3 - UUUGUUGGUGGUCAUUUAACC - 23
• Evidence: experimental ; Illumina [1]

Mature zma-miR827-3p

• Accession: MIMAT0014031
• Description: Zea mays zma-miR827-3p mature miRNA
• Sequence: 101 - UUAGAUGACCAUCAGCAAACA - 121
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716