Stem-loop zma-MIR529

Accession

MI0013241

Description

Zea mays zma-MIR529 precursor miRNA

Gene family

MIPF0000388; MIR529

Literature search

14 open access papers mention zma-MIR529
(65 sentences)

Sequence

2545 reads, 12557 reads per million, 2 experiments

gAGAAGAGAGAGAGUACAGCCUuguugccauguacacacucagauaucaacagucucuuauauuugcuguuacuaccuguuauuaguguccagugaugaugaagGCUGUACCCUCUCUCUUCUUCu
((((((((((((.((((((((((((((.(((....((((((((.((..((((((...........))))))..)).))).....)))))...))).)))).)))))))))).))))))))))))..

Structure

--            A          -    c   guac     -----   a  uc      cucu 
  gAGAAGAGAGAG GUACAGCCUu guug cau    acacu     cag ua  aacagu    u
  |||||||||||| |||||||||| |||| |||    |||||     ||| ||  ||||||    a
  UUCUUCUCUCUC CAUGUCGgaa uagu gug    uguga     guc au  uugucg    u
uC            C          g    a   -acc     uuauu   c  ca      uuua 

Annotation confidence High

Genome context

chr5: 164370906-164371031 [+]

Mature zma-miR529-5p

• Accession: MIMAT0014030
• Description: Zea mays zma-miR529-5p mature miRNA
• Sequence: 2 - AGAAGAGAGAGAGUACAGCCU - 22
• Evidence: experimental ; Illumina [1]

Mature zma-miR529-3p

• Accession: MIMAT0015364
• Description: Zea mays zma-miR529-3p mature miRNA
• Sequence: 105 - GCUGUACCCUCUCUCUUCUUC - 125
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716