Stem-loop sequence zma-MIR482

Accession

MI0013238 (change log)

Description

Zea mays miR482 stem-loop

Literature search

6 open access papers mention zma-MIR482
(14 sentences)

Stem-loop

   --        - ug      ccuu  --au   --u   accgccggaggagcgcucgccuucu 
5'   agugggag a  aaggag    gc    cga   guc                         u
     |||||||| |  ||||||    ||    |||   |||                         c
3'   uuacccuc u  uuccuu    cg    gcu   cag                         g
   uu        c ug      --cu  cucc   ccc   gcucccgccgauaacgccgccacgc 

Deep sequencing

738 reads, 869 reads per million, 151 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): LPUQ01000192.1: 319480-319601 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0013238

Mature sequence zma-miR482-5p

• Accession: MIMAT0015361
• Previous IDs: zma-miR482*
• Sequence: 3 - ugggagaugaaggagccuu - 21
• Deep sequencing: 3 reads, 3 experiments
• Evidence: not experimental

Mature sequence zma-miR482-3p

• Accession: MIMAT0014027
• Previous IDs: zma-miR482
• Sequence: 101 - ucuuccuuguuccucccauu - 120
• Deep sequencing: 1 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).