Stem-loop zma-MIR399j

Accession

MI0013236

Description

Zea mays zma-MIR399j precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

22 open access papers mention zma-MIR399j
(67 sentences)

Sequence

388 reads, 2000 reads per million, 8 experiments

AGGCAGCUCUCCUCUGGCAGGcaggcgcgcggucaucgucgccaucgacgacgguugcuuggcucugcuaugcuguguucguucguccauggugugcuagcuagccgugcaugcauugcaguguaacaugcgugcaugcacgcgcguacguccUGCCAAAGGAGAGUUGCCCUGc
.((((((((((((.(((((((...(((((((((.(((((((.......))))))).))).((((..(((((((((((..(....)..))))))))...))).))))((((((((((.(((........)))))))))))))))))))....))))))).))))))))))))....

Structure

---A            C       -cag      -----ggucaucgucgccaucgacgacgguugcuu    cu   ---        uu g 
    GGCAGCUCUCCU UGGCAGG    gcgcgc                                   ggcu  gcu   augcugug  c u
    |||||||||||| |||||||    ||||||                                   ||||  |||   ||||||||  |  
    CCGUUGAGAGGA ACCGUcc    ugcgcg                                   ccga  cga   ugugguac  g u
cGUC            A       ugca      cacguacgugcguacaaugugacguuacguacgug    -u   ucg        cu c 

Annotation confidence Not enough data

Genome context

chr9: 24309478-24309652 [-]

Mature zma-miR399j-5p

• Accession: MIMAT0015359
• Description: Zea mays zma-miR399j-5p mature miRNA
• Sequence: 1 - AGGCAGCUCUCCUCUGGCAGG - 21
• Evidence: experimental ; Illumina [1]

Mature zma-miR399j-3p

• Accession: MIMAT0014025
• Description: Zea mays zma-miR399j-3p mature miRNA
• Sequence: 154 - UGCCAAAGGAGAGUUGCCCUG - 174
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716